山国武获论文在线 [7JVazquez F, Vaucheret H, Rajagopalan R, et al. Endogenous trans-acting siRNAs Regulate the Accumulation of 235 Arabidopsis mRNAs[J]. Molecular Cell, 2004, 16(1): 69-79 [8] Peragine A, Yoshikawa M, Wu G, et al. SGS3 and SGS2/SDEI/RDR6 are required for and the production of trans-acting siRNAs in Arabidopsis[J]. Genes Development, 2004 [9] Yoshikawa M, Peragine A, Park M Y, et al. A pathway for the biogenesis of trans-acting SiRNAs in Arabidopsis[]. Genes& Development, 2005, 19(18): 2164-217 240 [10JAxtell M J, Jan C, RajagopalanR, et al. A two-hit trigger for siRNA biogenesis in plants[J]. Cell, 2006, 127(3) 65-57 [11Allen e, Xie Z, Gustafson A M, et al. microRNA-Directed Phasing during Trans-Acting SiRNA Biogenesis in Pans[cell,2005,121(2):207-221 [12]Axtell M J, Snyder J A, Bartel D P. Common functions for diverse small RNAs of land plants[J]. The Plant 245 ell2007,196:1750-1769 [13Talmor-Neiman M, Stav R, Klipcan L, et al. Identification of trans-acting siRNAs in moss and an RNA polymerase required for their biogenesis[]. The Plant Journal, 2006, 48(4): 511-52 [14Liu B, Chen Z, Song X, et al. Oryza sativa dicer-like 4 reveals a key role for small interfering RNa silencing in plant development[]. The Plant Cell, 2007, 19(9): 2705-2718 250 [15] Zhao T, Li G, Mi S, et al. A complex system of small RNAS in the unicellular green alga ChlamydomonasreinhardtiiJ] Genes development, 2007, 21(10): 1190-1203 16]Heisel S E, Zhang Y, Allen E, et al. Characterization of unique small RNa populations from rice grainpJI PLoS One,2008,3(8)e287 [ 17]Zhu Q H, Spriggs A, Matthew L, et al. a diverse set of microRNAs and microRNA-like small RNAs in 255 developing rice grains[J]. Genome Research, 2008, 18(9): 1456-1465 [18 Allen E, Xie Z, Gustafson A M, et al. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana[]. Nature Ge 2004,36(12):1282-1290 [19]Fahlgren N, Montgomery T A, Howell M D, et al. Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-SiRNA affects developmental timing and patterning in Arabidopsis []. Current Biology, 2006, 16(9): 939-944 260 [20] Williams L, Carles C C, Osmont K S, et al. a database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes[]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(27): 9703-9708 [21JArif M A, Fattash L, Ma Z, et al. DICER-LIKE3 activity in physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility[]. Molecular Plant, 2012, 5(6): 1281-1294 265 [22 Johnson C, Kasprzewska A, Tennessen K, et al. Clusters and superclusters of phased small RNAs in the developing inflorescence of rice[J]. Genome Research, 2009, 19(8): 1429-1440 [23]Shivaprasad P V, Chen H M, Patel K, et al. A microRNA superfamily regulates nucleotide binding te-leucine-rich repeats and other mRNAs[]. The Plant Cell, 2012, 24(3): 859-874 270 [24]Arenas-Huertero C, Perez B, Rabanal F, et al. Conserved and novel miRNAs in the legume Phaseolus vulgaris response to stress]. Plant Molecular Biology, 2009, 70(4): 385-401 [25 Xia R, Zhu H, An Y, et al. Apple miRNAs and tasiRNAs with novel regulatory networks]. Genome biology, 2012,13(6):R47 [26TKallman T, Chen J, Gyllenstrand N, et al. A significant fraction of 21-nucleotide small RNa originates from phased degradation of resistance genes in several perennial species[]. Plant Physiology, 2013, 162(2): 741-754 275 [27]Windels D, Vazquez F. miR393: integrator of environmental cues in auxin signaling? [J]. Plant signaling Behavior,201l,6(11):1672-16 [28 Wang Y, Shen D, Bo S, et al. Sequence variation and selection of small RNAs in domesticated rice]. BMC 2010,10(1) [29]Li F, Pignatta D, Bendix C, et al. MicroRNA regulation of plant innate immune receptors[J]. Proceedings of 280 the National Academy of Sciences, 2012, 109(5): 1790-1795 30 Xia R, Meyers B C, Liu Z, et al. MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots[J]. The Plant Cell, 2013, 25: 1555-1572 [31]Song X, Li P, Zhai J, et al. Roles of DCL4 and dCL3b in rice phased small RNA biogenesis[]. The Plant Journal,2012,69(3):462-474 285 [32]Shen D, Wang S, Chen H, et al. Molecular phylogeny of miR390-guided trans-acting siRNA genes(TAS3)in the grass family!]. Plant Systematics and Evolution, 2009, 283(1-2): 125-132http://www.paper.edu.cn - 8 - 中国科技论文在线 [7]Vazquez F, Vaucheret H, Rajagopalan R, et al. Endogenous trans-acting siRNAs Regulate the Accumulation of 235 Arabidopsis mRNAs[J]. Molecular Cell, 2004, 16(1): 69-79. [8]Peragine A, Yoshikawa M, Wu G, et al. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis[J]. Genes & Development, 2004, 18(19): 2368-2379. [9] Yoshikawa M, Peragine A, Park M Y, et al. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis[J]. Genes & Development, 2005, 19(18): 2164-2175.. 240 [10]Axtell M J, Jan C, Rajagopalan R, et al. A two-hit trigger for siRNA biogenesis in plants[J]. Cell, 2006, 127(3): 565-577. [11]Allen E, Xie Z, Gustafson A M, et al. microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants[J]. Cell, 2005, 121(2): 207-221. [12]Axtell M J, Snyder J A, Bartel D P. Common functions for diverse small RNAs of land plants[J]. The Plant 245 Cell, 2007, 19(6): 1750-1769. [13]Talmor-Neiman M, Stav R, Klipcan L, et al. Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis[J]. The Plant Journal, 2006, 48(4): 511-521. [14]Liu B, Chen Z, Song X, et al. Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development[J]. The Plant Cell, 2007, 19(9): 2705-2718. 250 [15]Zhao T, Li G, Mi S, et al. A complex system of small RNAs in the unicellular green alga Chlamydomonasreinhardtii[J]. Genes & development, 2007, 21(10): 1190-1203. [16]Heisel S E, Zhang Y, Allen E, et al. Characterization of unique small RNA populations from rice grain[J]. PLoS One, 2008, 3(8): e2871. [17]Zhu Q H, Spriggs A, Matthew L, et al. A diverse set of microRNAs and microRNA-like small RNAs in 255 developing rice grains[J]. Genome Research, 2008, 18(9): 1456-1465. [18]Allen E, Xie Z, Gustafson A M, et al. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana[J]. Nature Genetics, 2004, 36(12): 1282-1290. [19]Fahlgren N, Montgomery T A, Howell M D, et al. Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis [J]. Current Biology, 2006, 16(9): 939-944. 260 [20] Williams L, Carles C C, Osmont K S, et al. A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(27): 9703-9708. [21]Arif M A, Fattash I, Ma Z, et al. DICER-LIKE3 activity in physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility[J]. Molecular Plant, 2012, 5(6): 1281-1294. 265 [22]Johnson C, Kasprzewska A, Tennessen K, et al. Clusters and superclusters of phased small RNAs in the developing inflorescence of rice[J]. Genome Research, 2009, 19(8): 1429-1440. [23]Shivaprasad P V, Chen H M, Patel K, et al. A microRNA superfamily regulates nucleotide binding site–leucine-rich repeats and other mRNAs[J]. The Plant Cell, 2012, 24(3): 859-874. [24]Arenas-Huertero C, Pérez B, Rabanal F, et al. Conserved and novel miRNAs in the legume Phaseolus vulgaris 270 in response to stress[J]. Plant Molecular Biology, 2009, 70(4): 385-401. [25]Xia R, Zhu H, An Y, et al. Apple miRNAs and tasiRNAs with novel regulatory networks[J]. Genome Biology, 2012, 13(6): R47. [26]TKällman T, Chen J, Gyllenstrand N, et al. A significant fraction of 21-nucleotide small RNA originates from phased degradation of resistance genes in several perennial species[J]. Plant Physiology, 2013, 162(2): 741-754. 275 [27]Windels D, Vazquez F. miR393: integrator of environmental cues in auxin signaling?[J]. Plant signaling & Behavior, 2011, 6(11): 1672-1675. [28]Wang Y, Shen D, Bo S, et al. Sequence variation and selection of small RNAs in domesticated rice[J]. BMC Evolutionary Biology, 2010, 10(1): 119. [29]Li F, Pignatta D, Bendix C, et al. MicroRNA regulation of plant innate immune receptors[J]. Proceedings of 280 the National Academy of Sciences, 2012, 109(5): 1790-1795. [30]Xia R, Meyers B C, Liu Z, et al. MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots[J]. The Plant Cell, 2013, 25:1555-1572. [31]Song X, Li P, Zhai J, et al. Roles of DCL4 and DCL3b in rice phased small RNA biogenesis[J]. The Plant Journal, 2012, 69(3): 462-474. 285 [32]Shen D, Wang S, Chen H, et al. Molecular phylogeny of miR390-guided trans-acting siRNA genes (TAS3) in the grass family[J]. Plant Systematics and Evolution, 2009, 283(1-2): 125-132