Review of DNA Seq. Comparison/Alignment Target frequencies and mismatch penalties Eukaryotic gene structure Comparative genomics applications Pipmaker(2 species comparison) Phylogenetic Shadowing(many species) Intro to DNA sequence motifsReview of DNA Seq. Comparison/Alignment • Target frequencies and mismatch penalties • Eukaryotic gene structure • Comparative genomics applications: (2 species comparison) • Intro to DNA sequence motifs - Pipmaker - Phylogenetic Shadowing (many species)