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To do Dynamic Programming First write one sequence across the top, and one down along the side Gap V D Gap 0 1 gap 2 gaps gap 2 gaps ESLc Note-linear gap penalty: Mo)=nA, where A=gap penaltyTo do Dynamic Programming: First write one sequence across the top, and one down along the side Gap V D S C Y Gap 0 1 gap 2 gaps V 1 gap E 2 gaps S L C Y Note – linear gap penalty: γ(n)=nA, where A=gap penalty
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