John von Neumann Institute for Computing NIC Introduction to Molecular Dynamics Simulation Michael P.Allen published in Computational Soft Matter:From Synthetic Polymers to Proteins, Lecture Notes, Norbert Attig,Kurt Binder,Helmut Grubmuller,Kurt Kremer(Eds.), John von Neumann Institute for Computing,Julich, N1 C Series,VolL.23,1SBN3-00-012641-4,pp.1-28,2004. C 2004 by John von Neumann Institute for Computing Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page.To copy otherwise requires prior specific permission by the publisher mentioned above. http://www.fz-juelich.de/nic-series/volume23John von Neumann Institute for Computing Introduction to Molecular Dynamics Simulation Michael P. Allen published in Computational Soft Matter: From Synthetic Polymers to Proteins, Lecture Notes, Norbert Attig, Kurt Binder, Helmut Grubmuller ¨ , Kurt Kremer (Eds.), John von Neumann Institute for Computing, Julich, ¨ NIC Series, Vol. 23, ISBN 3-00-012641-4, pp. 1-28, 2004. c 2004 by John von Neumann Institute for Computing Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. To copy otherwise requires prior specific permission by the publisher mentioned above. http://www.fz-juelich.de/nic-series/volume23