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Yang et al/Comparative transcriptome analysis of Phalaenopsis flowers (January 1998 to December 2000).Nat Prod Rep.2001;18(3):310-333. 21.Rushton DL,Tripathi P,Rabara RC,Lin J,Ringler P,Boken AK, http://dx.doi.org/10.1039/b006257j et al.WRKY transcription factors:key components in abscisic 11.Mortazavi A,Williams BA,McCue K,Schaeffer L.Wold B.Map- acid signalling.Plant Biotechnol J.2012;10(1):2-11.http://dx.doi. ping and quantifying mammalian transcriptomes by RNA-Seq.Nat 0rg10.1111/.1467-7652.2011.00634.x Methods.2008;5(7):621-628.http://dx.doi.org/10.1038/nmeth.1226 22.Rushton PI,Bokowiec MT,Han S,Zhang H,Brannock JF,Chen X,et 12.Xu P.Liu Z,Fan X,Gao J,Zhang X,Zhang X,et al.De novo transcrip- al.Tobacco transcription factors:novel insights into transcriptional tome sequencing and comparative analysis of differentially expressed regulation in the Solanaceae.Plant Physiol.2008;147(1):280-295. genes in Gossypium aridum under salt stress.Gene.2013;525(1):26-34. http:/dx.doi.org10.1104/pp.107.114041 http://dx.doi.org/10.1016/j.gene.2013.04.066 23.Golz JF,Hudson A.Plant development:YABBYs claw to the fore. 13.Hao QN,Zhou XA,Sha AH,Wang C,Zhou R,Chen SL.Identifica- Curr Biol..1999:9(22):R861-R863.http:/dk.doi.org/10.1016/ tion of genes associated with nitrogen-use efficiency by genome-wide S0960-9822(00)80047-0 transcriptional analysis of two soybean genotypes.BMC Genomics. 2011:12(1):525.http:/dk.doi.org10.1186/1471-2164-12-525 24.Jakoby M,Weisshaar B,Droge-Laser W,Vicente-Carbajosa J,Ti- 14.Tsai WC,Hsiao YY,Pan ZJ,Hsu CC,Yang YP,Chen WH,et al. edemann J.Kroj T,et al.bZIP transcription factors in Arabidopsis. 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Res Bull Fac Agric Gifu Univ Jpn.1992;57:181-185. 19.Guilfoyle TJ,Hagen G.Auxin response factors.Curr Opin Plant Biol. 2007:10(5)453-460.http:/dx.doi.org/10.1016/j-pbi.2007.08.014 29.Tatsuzawa F,Ichihara K,Shinoda K,Miyoshi K.Flower colours 20.Nakashima K,Tran LSP van Nguyen D,Fujita M,Maruyama K,Todaka and pigments in Disa hybrid (Orchidaceae).South Afr J Bot. D,et al.Functional analysis ofa NAC-type transcription factor OsNAC6 2010:76(1)49-53.http/dk.doi.org/10.1016/j.sab.2009.06.017 involved in abiotic and biotic stress-responsive gene expression in rice: 30.Grotewold E.The genetics and biochemistry of floral pigments.Ann rice OsNAC6 functions in stress responses.Plant J.2007;51(4):617- Rev Plant Biol.2006;57(1):761-780.http://dx.doiorg/10.1146/annurev. 630.http:/dk.doi.org/10.1111/j.1365-313X2007.03168.x arplant.57.032905.105248 The Author(s)2014 Published by Polish Botanical Soclety Acta Soc Bot Pol 83(3):191-199 199© The Author(s) 2014 Published by Polish Botanical Society Acta Soc Bot Pol 83(3):191–199 199 Yang et al. / Comparative transcriptome analysis of Phalaenopsis flowers (January 1998 to December 2000). Nat Prod Rep. 2001;18(3):310–333. http://dx.doi.org/10.1039/b006257j 11. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Map￾ping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5(7):621–628. http://dx.doi.org/10.1038/nmeth.1226 12. Xu P, Liu Z, Fan X, Gao J, Zhang X, Zhang X, et al. De novo transcrip￾tome sequencing and comparative analysis of differentially expressed genes in Gossypium aridum under salt stress. Gene. 2013;525(1):26–34. http://dx.doi.org/10.1016/j.gene.2013.04.066 13. Hao QN, Zhou XA, Sha AH, Wang C, Zhou R, Chen SL. Identifica￾tion of genes associated with nitrogen-use efficiency by genome-wide transcriptional analysis of two soybean genotypes. BMC Genomics. 2011;12(1):525. http://dx.doi.org/10.1186/1471-2164-12-525 14. Tsai WC, Hsiao YY, Pan ZJ, Hsu CC, Yang YP, Chen WH, et al. Molecular biology of orchid flowers. Adv Bot Res. 2008;47:99–145. http://dx.doi.org/10.1016/s0065-2296(08)00003-7 15. Yu H. Identification and characterization of three orchid MADS￾box genes of the AP1/AGL9 subfamily during floral transition. Plant Physiol. 2000;123(4):1325–1336. http://dx.doi.org/10.1104/ pp.123.4.1325 16. Mondragon-Palomino M, Trontin C. High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in mono￾cots. Ann Bot. 2011;107(9):1533–1544. http://dx.doi.org/10.1093/ aob/mcr059 17. Sargent RD. Floral symmetry affects speciation rates in angiosperms. Proc R Soc Lond B Biol Sci. 2004;271(1539):603–608. http://dx.doi. org/10.1098/rspb.2003.2644 18. Baumann K, Perez-Rodriguez M, Bradley D, Venail J, Bailey P, Jin H, et al. Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Development. 2007;134(9):1691–1701. http:// dx.doi.org/10.1242/dev.02836 19. Guilfoyle TJ, Hagen G. Auxin response factors. Curr Opin Plant Biol. 2007;10(5):453–460. http://dx.doi.org/10.1016/j.pbi.2007.08.014 20. Nakashima K, Tran LSP, van Nguyen D, Fujita M, Maruyama K, Todaka D, et al. Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice: rice OsNAC6 functions in stress responses. Plant J. 2007;51(4):617– 630. http://dx.doi.org/10.1111/j.1365-313X.2007.03168.x 21. Rushton DL, Tripathi P, Rabara RC, Lin J, Ringler P, Boken AK, et al. WRKY transcription factors: key components in abscisic acid signalling. Plant Biotechnol J. 2012;10(1):2–11. http://dx.doi. org/10.1111/j.1467-7652.2011.00634.x 22. Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, et al. Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae. Plant Physiol. 2008;147(1):280–295. http://dx.doi.org/10.1104/pp.107.114041 23. Golz JF, Hudson A. Plant development: YABBYs claw to the fore. Curr Biol. 1999;9(22):R861–R863. http://dx.doi.org/10.1016/ S0960-9822(00)80047-0 24. Jakoby M, Weisshaar B, Dröge-Laser W, Vicente-Carbajosa J, Ti￾edemann J, Kroj T, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci. 2002;7(3):106–111. http://dx.doi.org/10.1016/ S1360-1385(01)02223-3 25. Huang P, Ju HW, Min JH, Zhang X, Chung JS, Cheong HS, et al. Molecular and physiological characterization of the Arabidopsis thaliana oxidation-related zinc finger 2, a plasma membrane protein involved in ABA and salt stress response through the ABI2-mediated signaling pathway. Plant Cell Physiol. 2012;53(1):193–203. http:// dx.doi.org/10.1093/pcp/pcr162 26. van der Krol AR. Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. Plant Cell. 1990;2(4):291–299. http://dx.doi.org/10.1105/tpc.2.4.291 27. Kishimoto S, Sumitomo K, Yagi M, Nakayama M, Ohmiya A. Three routes to orange petal color via carotenoid components in 9 composi￾tae species. J Jpn Soc Hortic Sci. 2007;76(3):250–257. http://dx.doi. org/10.2503/jjshs.76.250 28. Matsui S. Varietal differences in flower colors of Cattleya aurantiaca. Res Bull Fac Agric Gifu Univ Jpn. 1992;57:181–185. 29. Tatsuzawa F, Ichihara K, Shinoda K, Miyoshi K. Flower colours and pigments in Disa hybrid (Orchidaceae). South Afr J Bot. 2010;76(1):49–53. http://dx.doi.org/10.1016/j.sajb.2009.06.017 30. Grotewold E. The genetics and biochemistry of floral pigments. Ann Rev Plant Biol. 2006;57(1):761–780. http://dx.doi.org/10.1146/annurev. arplant.57.032905.105248
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