Answer: use the j s and l s that give the best score Vectors from atom k to HS ERR V F 1223 A 0210 C E 9-8O8 R H ∽ R A 021141 01125 F NOTE: this gives an aLignment of how the residues of sequence a align with those of sequence b, when viewed from the perspective of i and k BUT, Which i' s and k's should you compare?Answer: use the j’s and l’s that give the best score Vectors from atom k to: i k H S E H R R V F C A M G G V Q H S E R R H V F 12 2 3 1 1 10 1 0 2 1 0 1 23 1 0 1 7 4 1 0 2 14 1 0 1 25 G Q Vectors from atom i to: V G M A C NOTE: this gives an ALIGNMENT of how the residues of sequence A align with those of sequence B, when viewed from the perspective of i and k. BUT, which i’s and k’s should you compare?