Genome Sequencing DNA Sequence Analysis The Language of genomics Shotgun Sequencing Progress: genomes, transcriptomes, etc DNA Sequence Alignment I How to choose a mismatch penalty Comparative Genomics EXamples PipMaker, Phylogenetic ShadowingGenome Sequencing & DNA Sequence Analysis • The Language of Genomics • Shotgun Sequencing • DNA Sequence Alignment I • Comparative Genomics Examples - Progress: genomes, transcriptomes, etc. - How to choose a mismatch penalty - PipMaker, Phylogenetic Shadowing