DNA Sequence Comparison Alignment Target frequencies and mismatch penalties Eukaryotic gene structure Comparative genomics applications Pipmaker(2 species comparison) Phylogenetic Shadowing(many species) Intro to DNA sequence motifs See Ch. 7 of MountDNA Sequence Comparison & Alignment • Target frequencies and mismatch penalties • Eukaryotic gene structure • Comparative genomics applications: • See Ch. 7 of Mount - Pipmaker (2 species comparison) - Phylogenetic Shadowing (many species) Intro to DNA sequenc e motifs