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MODBASE http://alto.compbio.ucsfedumodbase-cgi/index.cgi 733, 239 sequences 7, 120 non-redundant structures Fold Assignments (by PSI-BLAST) Reliable fold assignments: 827,007 for 413, 311 sequences Average folds per sequence: 2.0 Average length of queries: 511 amino acids Average length of folds: 229 amino acids Comparative Models(by mODELLeR) Reliable models 547,473 Sequences with reliable models: 327, 393(59%) Structures used as templates 6366(89%) For a reliable fold assignment psi-BLaSt E value<0.0001 oR a reliable model For a reliable model, 30% of Ca atoms superpose within 3. 5A of their correct positionsMODBASE http://alto.compbio.ucsf.edu/modbase-cgi/index.cgi • 733,239 sequences & 7,120 non-redundant structures • Fold Assignments (by PSI-BLAST) • Reliable fold assignments: 827,007 for 413,311 sequences • Average folds per sequence: 2.0 • Average length of queries: 511 amino acids • Average length of folds: 229 amino acids • Comparative Models (by MODELLER) • Reliable models 547,473 • Sequences with reliable models: 327,393 (59%) • Structures used as templates: 6.366 (89%) For a reliable fold assignment, PSI-BLAST E value < 0.0001 OR a reliable model. For a reliable model, 30% of Cα atoms superpose within 3.5Å of their correct positions
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