Many genefinding servers are available, and the following list is not complete. GENSCAN-GEnSCan is a genefinder developed by Chris Burge Glimmer M-limmerM is a gene finder developed specifically for small eukaryotes with a gene density of around 20% Genie- Genie is a gene identification tool developed at the University of California, Santa Cruz, that uses Hidden Markov Models to find genes FGENES- This genefinder is available through The Sanger Center's Computational Genomics Group. GRAIL- The Gene Recognition and Assembly Internet Link is available through the Oak Ridge National Laboratory Computational Biosciences Section HMMGene- This genefinder is available through the Center for Biological Sequence Analysis at the Department of Biotechnology, The Technical University of Denmark Splice site prediction Again, there are other sites, but the following sites are known to me. Splice Site Prediction by Neural Network-Hosted, by the berkeley Drosophila Genome Proiect and written by Martin Reese NetGene and NetPlantGene- both of these are available through the center for biological Sequence Analysis at the Department of Biotechnology, The Technical University of Denmark CDNA alignment SIM4-SIM4 is described by Florea et al The Intronerator-a collection of tools for exploring the molecular biology and genomics of C. elegans with a special emphasis on alternative splicing. This is specific to C. elegans, and does more than align cDNAsMany genefinding servers are available, and the following list is not complete. GENSCAN - GENSCAN is a genefinder developed by Chris Burge. GlimmerM - limmerM is a gene finder developed specifically for small eukaryotes with a gene density of around 20%. Genie - Genie is a gene identification tool developed at the University of California, Santa Cruz, that uses Hidden Markov Models to find genes. FGENES - This genefinder is available through The Sanger Center's Computational Genomics Group. GRAIL - The Gene Recognition and Assembly Internet Link is available through the Oak Ridge National Laboratory Computational Biosciences Section HMMGene - This genefinder is available through the Center for Biological Sequence Analysis at the Department of Biotechnology, The Technical University of Denmark. Splice site prediction Again, there are other sites, but the following sites are known to me. Splice Site Prediction by Neural Network - Hosted, by the Berkeley Drosophila Genome Project and written by Martin Reese. NetGene and NetPlantGene - Both of these are available through the Center for Biological Sequence Analysis at the Department of Biotechnology, The Technical University of Denmark. cDNA alignment SIM4 - SIM4 is described by Florea et al.. The Intronerator - a collection of tools for exploring the molecular biology and genomics of C. elegans with a special emphasis on alternative splicing. This is specific to C. elegans, and does more than align cDNAs