第九章系统发育分析 页码,31/32 revi si ted. cl adi stics 5, 113-129 Sol tis. d. e. sol tis. p.s. ni ckrent d. l, Johnson L. A. hahn W. A. Hoot S. B. Sweere,J. A. KuzoffR. K. Kron K. A. Chase, M. W. Swenson S. M Zi mmer, A. A, Chaw, S.-M, Gi e, L. J, Kress, W. J, and sytsma, K. J (1997). Angi sperm phyl ogeny inferred form 18S ri bosomal DNA sequences. Ann Mi ssouri bot garden 84, 1-49 Stri mmer, K, and von Haeseler, A.(1996). Quartet puzzl i ng a quartet maxi mum i kel i hood method for reconstructing tree topol ogi es. Mol. Biol. Evol. 13, 964 969 Sul Ii van, M. J, and Swofford, D. L.(1997) Are gui nea pi gs rodents? The i mportance of adequate model s i n mol ecul ar phyl ogeneti cs. J. Mammal. Evol. 4, 77 86 Swofford, D. L.(1990). PAUP. Phyl ogeneti c Anal ysi s Usi ng parsi mony Versi on 3.0 Computer program di stri buted by the Illi noi s Natural hi story Survey champan gi L Swofford, D. L,(1997) Swofford, D. L, and Ol sen, G. J.(1990 Swofford, D. L, 0l sen, G. J, Waddel I, P. J, and hi il is, D. M.(1996a) Phyl ogenetic inference. I n Mol ecul ar Systemati cs, D. M. HilliS. C. Mori tz and b K. Mabl e, Eds.(Sunderl and, MA: Si nauer Associ ates), pp. 407-514 Swofford, D. L, Thorne, J. L, Fel senstei n, J, and Wi egmann, B. M.(1996b).The topol ogy-dependent permutati on test for monophyl y does not test for monophyl y syst.Biol.45,575-579 Thompson, J. D, Hi ggi ns, D. G, and Gi bson T. J.(1994). Cl ustal W: I mprovi ng the sensi ti vi ty of progressi ve mul ti pl e al i gnment through sequence wei ghti ng Nucl. aci ds res 22 4673-4680 Thorne, J. L, and Ki shino, H. (1992). Freei ng phyl ogenies form arti facts of al i gnment. Mol. Bi ol 9,118-1162 Weston, P. H.(1994). Methods for rooti ng cl adi stic trees. i n Model s in phyl ogeny Reconstruction, R. W. ScotI and, D. J. Si ebert, and D. M. Wi ll i ams, Eds.(Oxford Systemati cs Associ ati on), pp. 125-155 Wheel er, W. C.(1994). Sources of ambi gui ty in nucl eic acid sequence al i gnment EXs69,323-352 Wheeler, W. C, and Gl adstein, D.(1994). MALI GN: a mul ti pl e sequence al i gnment program. J. Hered. 85, 417 Yang W. M, I nouye, C. J, Zeng Y, Bearss, D, and Seto, E.(1996) Transcri pti onal repress on by YYI is medi ated by interacti on wi th mammal i an homol og of the yeast gl obal regul ator RPD3. Proc. Natl. Acad. Sci. U. S. A. 93, file://E:wcb生物信息学(中译本)\第九章系统发育分析.htm 2005-1-18revisited. Cladistics 5, 113-129 Soltis, D. E., Soltis, P. S., Nickrent, D. L., Johnson, L. A., Hahn, W. A., Hoot, S. B., Sweere, J. A., Kuzoff, R. K., Kron, K. A., Chase, M. W., Swenson, S. M., Zimmer, A. A., Chaw, S.-M., Gillespie, L. J., Kress, W. J., and Sytsma, K. J. (1997). Angiosperm phylogeny inferred form 18S ribosomal DNA sequences. Ann. Missouri Bot. Garden 84, 1-49 Strimmer, K., and von Haeseler, A. (1996). Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964- 969 Sullivan, M. J., and Swofford, D. L. (1997) Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. J. Mammal. Evol. 4, 77- 86 Swofford, D. L. (1990). PAUP. Phylogenetic Analysis Using Parsimony, Version 3.0. Computer program distributed by the Illinois Natural History Survey, Champaign, IL. Swofford, D. L., (1997) Swofford, D. L., and Olsen, G. J. (1990) Swofford, D. L., Olsen, G. J., Waddell, P. J., and Hillis, D. M. (1996a). Phylogenetic inference. In Molecular Systematics, D. M. Hillis, C. Moritz and B. K. Mable, Eds. (Sunderland, MA: Sinauer Associates), pp. 407-514 Swofford, D. L., Thorne, J. L., Felsenstein, J., and Wiegmann, B. M. (1996b). The topology-dependent permutation test for monophyly does not test for monophyly. Syst. Biol. 45, 575-579 Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). Clustal W: Improving the sensitivity of progressive multiple alignment through sequence weighting. Nucl. Acids Res 22, 4673-4680 Thorne, J. L., and Kishino, H. (1992). Freeing phylogenies form artifacts of alignment. Mol. Biol. Evol. 9, 118-1162 Weston, P. H. (1994). Methods for rooting cladistic trees. In Models in Phylogeny Reconstruction, R. W. Scotland, D. J. Siebert, and D. M. Williams, Eds. (Oxford: Systematics Association), pp. 125-155 Wheeler, W. C. (1994). Sources of ambiguity in nucleic acid sequence alignment. Exs 69, 323-352 Wheeler, W. C., and Gladstein, D. (1994). MALIGN: A multiple sequence alignment program. J. Hered. 85, 417 Yang, W. M., Inouye, C. J., Zeng, Y., Bearss, D., and Seto, E. (1996). Transcriptional repression by YYI is mediated by interaction with mammalian homolog of the yeast global regulator RPD3. Proc. Natl. Acad. Sci. U. S. A. 93, ㄀бゴ㋏㒳থ㚆ߚᵤ 义ⷕˈ31/32 file://E:\wcb\⫳⠽ֵᙃᄺ˄Ё䆥ᴀ˅?㄀бゴ㋏㒳থ㚆ߚᵤ.htm 2005-1-18 Click to buy NOW! PDF-XCHANGE www.docu-track.com Click to buy NOW! PDF-XCHANGE www.docu-track.com