第九章系统发育分析 页码,30/3 carbamoyl phosphate synthetasa genes Compl ex evol uti onary hi story i ncl udes ar nternal dupl i cati on wi thi n a li pe, DD, Gunderson, J H, Nerad, T. A, and sogi n, M (1993). Smal I suni t ri osomal RNa of Exami ta infl ata and the quest for the first branch i n the eukaryotic tree. Mol. Bi ochem. Parasi tol. 59, 41-48 Lei pe, D. D, Wai nri ght, P. 0., Gunderson, J. H, Porter, D, Patterson, D. J Val ois, F, Hi mmeri ch, S, and Sogin, M. L.(1994). The Stramenopi les from a mol ecul ar perspecti ve: 16S-Ii ke rRNA sequences from Labyri nthul oi des mi nutum and Cafeteri a ronbergensi s. Phycol ogi a 33, 369-377 Lewis, P, and Lewis, L. A.(1995). MEGA: Mol ecul ar Evol uti onary genetics Anal ysi s, Versi on 1.02, by S. Kumar, K. Tamura, and M. Nei. Syst. Biol. 44,576- Li, W.-H.(1997). Mol ecul ar Evol uti on(Sunder I and, MA: Si nauer Associ ates) Lockhart, P. J, Steel, M. A, Hendy M. D, and penny D.(1994). Recover ng evol uti onary trees under a more real i stic model of sequence evol uti on. Mol. Bi ol Evol.11,605-612 Maddi son, W. P, and Maddi son, D.R. (1992). Maccl ade: Anal ysis of phyl ogeny and Character Evol uti on. Versi on 3. 0(Sunder I and, MA: Si nauer Associates Mi ndel I, D. P.(1991. Al i gni ng DNa sequences: Homol ogy and phyl ogenetic wei ghting. In Phyl o-geneti c Anal ysis of DNA Sequences, M. M. Mi yamoto and J Cracraft, Eds. (New York: Oxford Uni versi ty Press), pp. 73-89 Morri son, D. A, and Ellis, J. T.(1997). Effects of nucl eoti de sequence al i gnment on phyl ogeny esti mati on a case study of 18s rDNAs of Api compl exa. Mol Biol.Evo|.14.428-441 Ni xon, K. C, and Carpenter, J. M.(1993). On outgroups. Cl adi stics 9, 413-426 Ol sen, G. J, Matsuda, H, Hagstrom, R, and Overbeed, R. (1994). FastDNAml: A tool for constructi on of phyl ogenetic trees of Dna sequences usi ng maxi mum I i kel i hood. Comput. Appl. Bi osci. 10, 41 Penny D, Lockhart, P. J, Steel M. A, and Hendy, M. D.(1994). The rol e of models in reconstructi ng evol uti onary trees. In Model s in Phyl ogeny Reconstructi on, Systemati cs Associ ati on Speci al vol ume No. 52, R. W. Scotl and, D J. Si ebert and D. M. Wi I Ii ams, Eds.(Oxford: Cl arendon Press), pp. 211-230 Rzhetsky, A, and Nei, M.(1992). a simpl e method for esti mati ng and testi ng mi ni mum evolution trees Mol biol evol 9. 945-967 Rzhetsky, A, and Nei, M.(1994. METREE: a program package for i nferri ng and testi ng mi ni mun-evol uti on tress. Comput. Appl. Biosci. 10, 409-412 Sai tou, N.(1996). Reconstructi on of gene trees form sequence data. Methods Enzymo|.226,427-449 Sanderson, M. J.(1989). Confi dence I i mi ts on phyl ogen es: the bootstrap file://E:wcb生物信息学(中译本)\第九章系统发育分析.htm 2005-1-18carbamoylphosphate synthetasa genes:Complex evolutionary history includes an internal duplication within a Lipe,D.D.,Gunderson,J.H.,Nerad,T.A.,and sogin, M. L (1993).Small suunit riosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree. Mol. Biochem. Parasitol. 59, 41-48 Leipe, D. D., Wainright, P. O., Gunderson, J. H., Porter, D., Patterson, D. J., Valois, F., Himmerich, S., and Sogin, M. L. (1994). The Stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minutum and Cafeteria ronbergensis. Phycologia 33, 369-377 Lewis, P., and Lewis, L. A. (1995). MEGA: Molecular Evolutionary Genetics Analysis, Version 1.02, by S. Kumar, K. Tamura, and M. Nei. Syst. Biol. 44, 576- 577 Li, W.-H. (1997). Molecular Evolution (Sunderland, MA: Sinauer Associates). Lockhart, P. J., Steel, M. A., Hendy, M. D., and Penny, D. (1994). Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612. Maddison, W. P., and Maddison, D. R. (1992). MacClade: Analysis of phylogeny and Character Evolution. Version 3.0 (Sunderland, MA: Sinauer Associates). Mindell, D. P. (1991). Aligning DNA sequences: Homology and phylogenetic weighting. In Phylo-genetic Analysis of DNA Sequences, M. M. Miyamoto and J. Cracraft, Eds. (New York: Oxford University Press), pp. 73-89 Morrison, D. A., and Ellis, J. T. (1997). Effects of nucleotide sequence alignment on phylogeny estimation: A case study of 18S rDNAs of Apicomplexa. Mol. Biol. Evol. 14, 428-441 Nixon, K. C., and Carpenter, J. M. (1993). On outgroups. Cladistics 9, 413-426 Olsen, G. J., Matsuda, H., Hagstrom, R., and Overbeed, R. (1994). FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10, 41 Penny, D., Lockhart, P. J., Steel, M. A., and Hendy, M. D. (1994). The role of models in reconstructing evolutionary trees. In Models in Phylogeny Reconstruction, Systematics Association Special Volume No. 52, R. W. Scotland, D. J. Siebert and D. M. Williams, Eds. (Oxford: Clarendon Press), pp. 211-230 Rzhetsky, A., and Nei, M. (1992). A simple method for estimating and testing minimum evolution trees. Mol. Biol. Evol. 9, 945-967 Rzhetsky, A., and Nei, M. (1994). METREE: A program package for inferring and testing minimun-evolution tress. Comput. Appl. Biosci. 10, 409-412 Saitou, N. (1996). Reconstruction of gene trees form sequence data. Methods Enzymol. 226, 427-449 Sanderson, M. J. (1989). Confidence limits on phylogenies: the bootstrap ㄀бゴ㋏㒳থ㚆ߚᵤ 义ⷕˈ30/32 file://E:\wcb\⫳⠽ֵᙃᄺ˄Ё䆥ᴀ˅?㄀бゴ㋏㒳থ㚆ߚᵤ.htm 2005-1-18 Click to buy NOW! PDF-XCHANGE www.docu-track.com Click to buy NOW! PDF-XCHANGE www.docu-track.com