Review of DNA Seq. Comparison/Alignment Target frequencies and mismatch penalties Eukaryotic gene structure Comparative genomics applications Pipmaker(2 species comparison) Phylogenetic Shadowing(many species) Intro to DNA sequence motifs
The Language of genomics CDNAS, ESTS. BACS Alus. etc Dideoxy Method Shotgun Sequencing The 'shotgun coverage equation(Poisson) Flavors of blast BLASTIPNXJ, TBLASTINXI Statistics of High Scoring Segments
Outline FASTA, Blast searching, Smith-Waterman Psi-Blast Review of Genomic DNA structure Substitution patterns and mutation rates Synonymous and non-Synonymous substitutions Jukes-Cantor Model Kimura's Two-Parameter Model
Viral gastroenteritis It is thought that viruses are responsible for up to 3/4 of all infective diarrhoeas Viral gastroenteritis is the second most common viral illness after upper respiratory tract infection
Chapter 2 Application Layer Computer Networking: A Top Down Approach The PowerPoint Slides are based on Featuring the Internet, 2nd edition. the material provided by Jim Kurose, Keith Ross .F Kurose and K.W. Ross. Addison-Wesley, July
Chapter 3 Transport Layer Computer Networking The Powerpoint slides are based on the A Top Down Approach material provided by Featuring the Internet J F Kurose and K.W. Ross 2nd edition
Chapter 4 Network Layer Computer Networking: A Top Down Approach Featuring the Internet The PowerPoint Slides are based on the material 2nd edition. provided by Jim Kurose, Keith Ross