TOPIC 1 Principles of Transcriptional Regulation [watch the animation] TOPIC 2 Regulation of Transcription Initiation: Examples from Bacteria (Lac operon, alternative s factors, NtrC,MerR, Gal rep, araBAD operon) TOPIC 3 Examples of Gene Regulation after Transcription Initiation (Trp operon) TOPIC 4 The Case of Phage λ: Layers of Regulation

Similarity of regulation between eukaryotes and prokaryote 1.Principles are the same: • signals (信号), • activators and repressors (激活蛋白和阻 遏蛋白) • recruitment and allostery, cooperative binding (招募，异构和协同结合) 2. The gene expression steps subjected to regulation are similar, and the initiation of transcription is the most pervasively regulated step

◼ What are the main challenges of translation and how do organisms overcome them? ◼ What is the organization of nucleotide sequence information in mRNA? ◼ What is the structure of tRNAs, and how do aminoacyl tRNA synthetases recognize and attach the correct amino acids to each tRNA? ◼ How does the ribosome orchestrate the translation process?

Most of the eukaryotic genes are mosaic (嵌合体), consisting of intervening sequences separating the coding sequence ◼ Exons (外显子): the coding sequences ◼ Introns (内含子) : the intervening sequences ◼ RNA splicing: the process by which introns are removed from the pre￾mRNA. ◼ Alternative splicing (可变剪接): some pre-mRNAs can be spliced in more than one way , generating alternative mRNAs. 60% of the human genes are spliced in this manner

Although DNA replication, repair, homologous recombination occur with high fidelity to ensure the genome identity between generations, there are genetic processes that rearrange DNA sequences and thus lead to a more dynamic genome structure Two classes of genetic recombination for DNA rearrangement: • Conservative site-specific recombination (CSSR): recombination between two defined sequence elements • Transpositional recombination (Transposition): recombination between specific sequences and nonspecific DNA sites

（1）不离开自己的座位。（2）收起书和笔记，不可放 在桌面上。（3）只能看和写自己的试卷（4）老师宣布 停的时候，所有学生必须放下自己的笔，眼睛 向前看。 （5）老师宣布收试卷时，试卷必须快速由每排的最左 边传向右边，每排最右边的同学负责把试卷交给当堂助 教

1. Please define the term “mutation”, and list the major types of DNA mutations and their corresponding phenotypic effects. (20 points) 2. Please define the term “DNA lesion”. Please list the three types of DNA lesions and the chemical or physical mutagens cause these lesions. (20 points)

Q1. Prokaryotic cell E. coli consists of a single closed-circular DNA molecule of 4.6 x 106 bp long. This DNA molecule would be 1.6 mm if the double helix is relaxed. Please describe what strategies does E. coli use to pack such a long molecules into its nucleoid less than a micrometer (mm) in diameter. (20 points)

Q1. Prokaryotic cell E. coli consists of a single closed-circular DNA molecule of 4.6 x 106 bp long. This DNA molecule would be 1.6 mm if the double helix is relaxed. Please describe what strategies does E. coli use to pack such a long molecules into its nucleoid less than a micrometer (mm) in diameter. (20 points)

（1）不离开自己的座位。（2）合上书和笔记。（3） 个人只能看和写自己的试卷（4）老师宣布停的时候， 所有学生必须放下自己的笔，眼睛 向前看。（5）老师 宣布收试卷时，试卷必须快速由每排的最左边传向右边， 每排最右边的同学负责把试卷交给当堂助教