I. The Phylogeny of Bacteria • 17.1 Phylogenetic Overview of Bacteria II. Phototrophic, Chemolithotrophic, and Methanotrophic Proteobacteria • 17.2 Purple Phototrophic Bacteria • 17.3 The Nitrifying Bacteria • 17.4 Sulfur- and Iron-Oxidizing Bacteria • 17.5 Hydrogen-Oxidizing Bacteria • 17.6 Methanotrophs and Methylotrophs III. Aerobic and Facultatively Aerobic Chemoorganotrophic Proteobacteria • 17.7 Pseudomonas and the Pseudomonads • 17.8 Acetic Acid Bacteria • 17.9 Free-Living Aerobic Nitrogen-Fixing Bacteria • 17.10 Neisseria, Chromobacterium, and Relatives • 17.11 Enteric Bacteria • 17.12 Vibrio, Aliivibrio, and Photobacterium • 17.13 Rickettsias V. Delta- and Epsilonproteobacteria • 17.17 Myxobacteria • 17.18 Sulfate- and Sulfur-Reducing Proteobacteria • 17.19 The Epsilonproteobacteria

厚壁菌门，柔膜菌门和放线菌 18.1 Nonsporulating Firmicutes 18.2 Endospore-Forming Firmicutes 18.3 Mollicutes: The Mycoplasmas 18.4 Actinobacteria: Coryneform and Propionic Acid Bacteria 18.5 Actinobacteria: Mycobacterium 18.6 Filamentous Actinobacteria: Streptomyces and Relatives 18.7 Cyanobacteria 蓝细菌 18.8 Prochlorophytes 原绿生物 18.9 The Chlamydia 衣原体 The Planctomycetes 浮霉菌门 18.10 Planctomyces: A Phylogenetically Unique Bacterium 疣微菌门 18.11 Verrucomicrobium and Prosthecobacter疣微菌属和突柄杆菌属 18.12 Bacteroides and Flavobacterium 18.13 Acidobacteria 酸杆菌 The Cytophaga Group 噬纤维菌 18.14 Cytophaga and Relatives 18.15 Chlorobium and Other Green Sulfur Bacteria 绿硫杆菌属等绿色硫细菌 18.16 Spirochetes螺旋体 18.17 Deinococcus and Thermus Hyperthermophilic Bacteria 18.19 Thermotoga and Thermodesulfobacterium 18.20 Aquifex, Thermocrinis, and Relatives Chen Feng, Microbiology, SJTU 18.20 Aquifex, Thermocrinis, and Relatives 18.21 Nitrospira and Deferribacter

I. Eukaryotic cell structure/ function and genetics 18.1 Eukaryotic cell 18.2 Respiratory Organelles: Mitochondrion & Hydrogenosome 18.3 Photosynthetic Organelle: Chloroplast叶绿体 18.4 Endosymbiosis: Relationships of Mitochondria and Chloroplasts to Bacteria内共生学说 18.5 Other Organelles and Eukaryotic Cell Structures 18.8 Phylogeny of the Eukarya 18.9 Protozoa 原生生物

I. Bacterial Cell Division 5.1 Cell Growth and Binary Fission 5.2 Fts proteins and the cell division plane 5.3 Peptidoglycan synthesis and cell division 肽聚糖合成与细胞分裂 5.4 Growth terminology and the concept of exponential growth 5.5 The mathematics of exponential growth 5.6 The Growth Cycle 生长周期

5.10 Effect of Temperature on Growth 5.11 Microbial growth at cold temperatures 5.12 Microbial growth at high temperatures 5.14 Osmotic Effects on Microbial Growth 渗透压影响 5.15 Oxygen and microbial growth Aerobes好氧菌 • Strict Aerobes专性好氧菌 • Microaerophiles微好氧菌 • Facultative aerobes兼性好氧菌 Anaerobes厌氧菌 • Aerotolerant anaerobes耐氧的厌氧菌 • Obligate (strict) anaerobes专性厌氧菌 5.16 Toxic forms of oxygen

III. ANTIMICROBIAL AGENTS USED IN VIVO 体内使用的抗微生物制剂 Selective toxicity选择毒性 Can be used internally可体内使用 Chemotherapeutic agents化学治疗剂 6.6 Synthetic Antimicrobial Drugs 人工合成的抗微生物药物 6.7 Antibiotics: Naturally occurring antimicrobial drugs 抗生素 IV. ANTIMICROBIAL DRUG RESISTANCE AND DRUG DISCOVERY 抗药性与新药研制 6.8 Antimicrobial drug resistance

III. DNA-Binding Proteins and Regulation of Transcription by Negative and Positive Control (Transcriptional level regulation) DNA结合蛋白与转录水平的调控 8.5 Negative control of transcription: Repression and Induction转录的负调控 8.6 Positive Control of Transcription ----Activator mediated regulation by protein-DNA binding IV. Global Regulation Mechanisms 8.7 Catabolite Repression ----Global control and the lac operon代谢分解物抑制 8.8 Other global control network 8.9 Quorum Sensing 群体感应

8.10 Signal transduction and two-component regulatory system VI. Differences between prokaryotes and eukaryotes in gene expression V. RNA-Based Regulation 8.11 RNA Regulation and Antisense RNA 8.12 Riboswitches 8.13 Attenuation 弱化作用

第一节 土的形成 1.1 The Formation of soils 第二节 土的三相组成 1.2 The Three-Phase Composition of soils 第三节 土的物理状态 1.3 The Physical State of Soils 第四节 土的结构 1.4 The structure of soils 第五节 土的工程分类 1.5The engineering classification of soils 第六节 土的压实性 1.6 Soil Compaction

•1. 掌握饱和土有效应力原理的基本概念; •2. 理解非饱和土有效应力原理; •3. 掌握渗流稳定条件下土体中的有效应力计算 •4. 本节难点为轴对称三维应力状态孔压系数的概念及其计算方法