Although DNA replication, repair, homologous recombination occur with high fidelity to ensure the genome identity between generations, there are genetic processes that rearrange DNA sequences and thus lead to a more dynamic genome structure Two classes of genetic recombination for DNA rearrangement: • Conservative site-specific recombination (CSSR): recombination between two defined sequence elements • Transpositional recombination (Transposition): recombination between specific sequences and nonspecific DNA sites
1. Please define the term “mutation”, and list the major types of DNA mutations and their corresponding phenotypic effects. (20 points) 2. Please define the term “DNA lesion”. Please list the three types of DNA lesions and the chemical or physical mutagens cause these lesions. (20 points)
Q1. Prokaryotic cell E. coli consists of a single closed-circular DNA molecule of 4.6 x 106 bp long. This DNA molecule would be 1.6 mm if the double helix is relaxed. Please describe what strategies does E. coli use to pack such a long molecules into its nucleoid less than a micrometer (mm) in diameter. (20 points)
Q1. Prokaryotic cell E. coli consists of a single closed-circular DNA molecule of 4.6 x 106 bp long. This DNA molecule would be 1.6 mm if the double helix is relaxed. Please describe what strategies does E. coli use to pack such a long molecules into its nucleoid less than a micrometer (mm) in diameter. (20 points)
1. What are the gene expression stages that can be regulated? (10 points) Regulated stages in gene expression: (1) transcription initiation (the most important stage): RNAP binding of the promoter, transition from the closed complex to the open complex; promoter escape 4’ (2) stages after initiation (elongation and termination) 2’ (3) RNA processing (alternative splicing) in eukaryotes 2’ (4) translation 2’
Your answer should describe what each item is and how it functions in the cell. Diagrams, structure and sequence information could be included in your answer, as necessary. 1. Affinity chromotography 2. microRNA 3. Alternative splicing 4. Insulator 5. Riboswitch 6. Wobble concept 7. Topoisomerase