Genome Sequence determination 陳中庸 E-mail:cychen@cycu.edu.tw Web site:www.cychen.idv.tw
Genome Sequence determination 陳中庸 E-mail: cychen@cycu.edu.tw Web site: www.cychen.idv.tw
Complete Microbial Genomes Genomes Windows Internet Explorer e]http://cmr.jcvi.org/tigr-scripts/CMR/shared/Genomes.cgi?bacteria_only=1x Google Google G 习開始凸~RS,②·☆書盛，图1916已湖煎5拼字於查~活翻择得送到~ @設定 文￥ 合 Genomes 份、司品、国锅頁（卫）、©工具(Q)· JCVICMR Search Locus for Go Comprehensive Micrebial Resource Home Genome Tools Searches Comparative Tools Lists Downloads Carts CMR Manual Home>Genome Tools>All Genomes Genomes:Bacteria Only Download 401 Total Genomes 384 Complete,17 Incomplete 0 Eukarya,28 Archaea,370 Bacteria,3 Viruses [G]=GenBank FTP []=TIGR FTP [S]=Sequencing Center Genome Page [N]=NCBI Genome Page [P]=Publication Organism Name Kingdom Taxon Size Complete D Sequencing Center Links (sort) (sort) (sort) Genome (sort) (sort) (sort) (sort) Acidithiobacillus ferrooxidans ATCC 23270 Bacteria 243159 2.98Mb Yes Integrated Genomics Inc G1▣SNPI Acidobacteria bacterium Ellin345 Bacteria 204669 5.65Mb Yes Joint Genome Institute G可[S][N][P] Acinetobacter sp.ADP1 Bacteria 62977 3.59Mb Yes Genoscope G1可[s]MPI Actinomyces naeslundil MG1 Bacteria 240017 3.041Mb Yes IIGR IG)四S)NIPI Aeromonas hydrophila ATCC7966 Bacteria 196024 4.74M6 Yes nIGR/Univ of Maryland G▣SW凹 Agrobacterium tumefaciens C58 Cereon Bacteria 176299 5.67Mb Yes Cereon Genomics/University of Richmond G可S]N凹 Agrobacterium tumefaciens C58 UWash Bacteria 176299 5.67Mb Yes DuPont/Uniy of Washington/Uni of Campinas 回m[SMP Alcanivorax borkumensis SK2 Bacteria 393595 3.12Mb Yes Bielefeld Univ G团mSMP] Anabaena varabllis ATCC 29413 Bacteria 240292 7.06Mb Yes Joint Genome InstitutelUniv of Missouri Ga可[SMPI Anseromyxobacter dehalogenans 2CP- Bacteria 290397 5.01Mb Yes Joint Genome Institute G可[S][N][P] Amnliean Evoraee tnelhiachinntan Ctote
Complete Microbial Genomes
Genome what now? Sequencing is... Determining the full nucleotide sequence of one strain of an organism ■ Making predictions of genes within that sequence predicting the function of those genes ■ HARD!!!! 口 Sequencing requires... Time ■ Money People Computers
Genome what now? Sequencing is… ◼ Determining the full nucleotide sequence of one strain of an organism ◼ Making predictions of genes within that sequence & predicting the function of those genes ◼ HARD!!!! Sequencing requires… ◼ Time ◼ Money ◼ People ◼ Computers
Genome what now? ▣ Before Sequencing 0 ■ Nature of an organism Genetic code ■Genome size ■Genome structure ▣Sequencing means… Bioinformatic Functional Assay More
Before Sequencing … ◼ Nature of an organism ◼ Genetic code ◼ Genome size ◼ Genome structure Sequencing means… - Bioinformatic - Functional Assay - More…. Genome what now?
Organism Selection Library Creation
Organism Selection Library Creation
Organism Selection Library Creation Sequencing
Organism Selection Library Creation Sequencing
Organism Selection Library Creation Sequencing 7 Assembly
Organism Selection Library Creation Sequencing Assembly
Organism Selection Library Creation Sequencing 7 Assembly
Organism Selection Library Creation Sequencing Assembly
Organism Selection Library Creation Sequencing Assembly
Organism Selection Library Creation Sequencing Assembly
Organism Selection Library Creation Sequencing 7 Assembly Gap Closure
Organism Selection Library Creation Sequencing Assembly Gap Closure